|
|
| CATH domain | Related DB codes (homologues) |
|---|
| 3.30.9.10 | D00037,D00041,D00494,T00025 | | 3.50.50.60 | M00163,D00015,D00041,D00042,D00045,D00071,T00004,T00015,T00017,T00025,T00211,T00213,T00233,T00242 |
| Enzyme Name | | Swiss-prot | KEGG |
|---|
| P20586 | P00438 |
|---|
| Protein name | P-hydroxybenzoate hydroxylase | P-hydroxybenzoate hydroxylase | 4-hydroxybenzoate 3-monooxygenasep-hydroxybenzoate hydrolyasep-hydroxybenzoate hydroxylase4-hydroxybenzoate 3-hydroxylase4-hydroxybenzoate monooxygenase4-hydroxybenzoic hydroxylasep-hydroxybenzoate-3-hydroxylasep-hydroxybenzoic acid hydrolasep-hydroxybenzoic acid hydroxylasep-hydroxybenzoic hydroxylase |
|---|
| Synonyms | PHBHEC 1.14.13.24-hydroxybenzoate 3-monooxygenase | EC 1.14.13.24-hydroxybenzoate 3-monooxygenase |
|---|
| KEGG pathways | | MAP code | Pathways |
|---|
| MAP00362 | Benzoate degradation via hydroxylation | | MAP00623 | 2,4-Dichlorobenzoate degradation |
| Swiss-prot:Accession Number | P20586 | P00438 |
|---|
| Entry name | PHHY_PSEAE | PHHY_PSEFL |
|---|
| Activity | 4-hydroxybenzoate + NADPH + O(2) = protocatechuate + NADP(+) + H(2)O. | 4-hydroxybenzoate + NADPH + O(2) = protocatechuate + NADP(+) + H(2)O. |
|---|
| Subunit | Homodimer. | Homodimer. |
|---|
| Subcellular location |
|
|
|---|
| Cofactor | FAD. | FAD. |
|---|
| Cofactors | Substrates | Products | intermediates |
|---|
| KEGG-id | C00016 | C00156 | C00005 | C00007 | C00080 | C00230 | C00006 | C00001 |
|
|
|---|
| Compound | FAD | 4-Hydroxybenzoate | NADPH | O2 | H+ | Protocatechuate | NADP+ | H2O | Flavin 4a-hydroperoxide intermediate | Flavin 4a-hydroxide intermediate |
|---|
| Type | amide group,amine group,aromatic ring (only carbon atom),aromatic ring (with nitrogen atoms),carbohydrate,nucleotide | aromatic ring (only carbon atom),carboxyl group | amide group,amine group,nucleotide | others | others | aromatic ring (only carbon atom),carboxyl group | amide group,amine group,nucleotide | H2O |
|
|
|---|
| 1bf3A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bgjA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bgnA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bkwA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cc4A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cc6A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj2A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj3A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj4A01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1d7lA01 |  | Analogue:RFL | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1dobA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1docA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1dodA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1doeA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iusA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iutA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuuA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuvA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuwA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuxA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbbA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbcA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbdA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbeA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbfA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pdhA01 |  | Analogue:FAS | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1phhA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pxaA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pxbA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pxcA01 |  | Bound:FAD | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 2phhA01 |  | Analogue:APR | Unbound | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bf3A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bgjA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bgnA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1bkwA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cc4A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cc6A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj2A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj3A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1cj4A02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1d7lA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1dobA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1docA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1dodA02 |  | Unbound | Unbound | Unbound | Unbound |
| Analogue:DOB | Unbound |
|
|
|
|---|
| 1doeA02 |  | Unbound | Unbound | Unbound | Unbound |
| Analogue:DOB | Unbound |
|
|
|
|---|
| 1iusA02 |  | Unbound | Analogue:PAB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iutA02 |  | Unbound | Analogue:PAB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuuA02 |  | Unbound | Analogue:PAB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuvA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuwA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1iuxA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbbA02 |  | Unbound | Unbound | Unbound | Unbound |
| Analogue:DOB | Unbound |
|
|
|
|---|
| 1pbcA02 |  | Unbound | Unbound | Unbound | Unbound |
| Analogue:BHA | Unbound |
|
|
|
|---|
| 1pbdA02 |  | Unbound | Analogue:PAB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbeA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pbfA02 |  | Unbound | Unbound | Unbound | Unbound |
| Analogue:BHA | Unbound |
|
|
|
|---|
| 1pdhA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1phhA02 |  | Unbound | Unbound | Unbound | Unbound |
| Bound:DHB | Unbound |
|
|
|
|---|
| 1pxaA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pxbA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 1pxcA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| 2phhA02 |  | Unbound | Bound:PHB | Unbound | Unbound |
| Unbound | Unbound |
|
|
|
|---|
| References for Catalytic Mechanism | | References | Sections | No. of steps in catalysis |
|---|
| [3] | p.72-73 |
| | [4] | Fig.3, Fig.4 |
| | [5] | Fig.3 |
| | [7] | Fig.1, p.647 |
| | [10] | Fig.1, Fig.2, Fig.6, Fig.7, Fig.8, p.3104-3106 |
| | [12] | p.144-145 |
| | [13] | Fig.1 |
| | [14] | Scheme 1 |
| | [16] | Fig.1 |
| | [18] | Scheme 1, Scheme 2, Scheme 3, p.574-578 |
| | [24] | Fig.1, Scheme 1, p.6294-6298 |
| | [25] | Scheme 1, p.16641-16646 |
| | [30] | Fig.1, p.170-172 |
| | [33] | Scheme 2, Scheme 7 |
| | [36] | Fig.1 |
| | [37] | Fig.1, p.22212-22215 |
| | [38] | Fig.1, p.1573-1579 |
| | [39] | Fig.1 |
| | [40] | Fig.1, p.305-309 |
|
| references | | [1] |
|---|
| PubMed ID | 807574 |
|---|
| Journal | J Biol Chem |
|---|
| Year | 1975 |
|---|
| Volume | 250 |
|---|
| Pages | 5268-9 |
|---|
| Authors | Drenth J, Hol WG, Wierenga RK |
|---|
| Title | Crystallization and preliminary x-ray investigation of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. |
|---|
| [2] |
|---|
| PubMed ID | 819305 |
|---|
| Journal | FEBS Lett |
|---|
| Year | 1976 |
|---|
| Volume | 65 |
|---|
| Pages | 84-6 |
|---|
| Authors | Marius A, Schepman, Schutter WG, van Bruggen EF |
|---|
| Title | Electron microscopic studies on microcrystals of parahydroxybenzoate hydroxylase from Pseudomonas fluorescens. |
|---|
| [3] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) |
|---|
| Medline ID | 80029705 |
|---|
| PubMed ID | 40036 |
|---|
| Journal | J Mol Biol |
|---|
| Year | 1979 |
|---|
| Volume | 131 |
|---|
| Pages | 55-73 |
|---|
| Authors | Wierenga RK, de Jong RJ, Kalk KH, Hol WG, Drenth J |
|---|
| Title | Crystal structure of p-hydroxybenzoate hydroxylase. |
|---|
| Related Swiss-prot | P00438 |
|---|
| [4] |
|---|
| PubMed ID | 6617648 |
|---|
| Journal | Eur J Biochem |
|---|
| Year | 1983 |
|---|
| Volume | 135 |
|---|
| Pages | 543-8 |
|---|
| Authors | Visser CM |
|---|
| Title | Reaction mechanism of flavin-dependent hydroxylation. Evolution of a non-imitable enzyme. |
|---|
| [5] |
|---|
| PubMed ID | 6235473 |
|---|
| Journal | Orig Life |
|---|
| Year | 1984 |
|---|
| Volume | 14 |
|---|
| Pages | 699-705 |
|---|
| Authors | Visser CM |
|---|
| Title | Evolution of biocatalysis 4. Nicotinamide, flavin and dioxygen dependent hydroxylation. Origin of a non-imitable enzyme. |
|---|
| [6] |
|---|
| PubMed ID | 3343242 |
|---|
| Journal | J Biol Chem |
|---|
| Year | 1988 |
|---|
| Volume | 263 |
|---|
| Pages | 3131-6 |
|---|
| Authors | Schreuder HA, Hol WG, Drenth J |
|---|
| Title | Molecular modeling reveals the possible importance of a carbonyl oxygen binding pocket for the catalytic mechanism of p-hydroxybenzoate hydroxylase. |
|---|
| [7] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) |
|---|
| Medline ID | 88172509 |
|---|
| PubMed ID | 3351945 |
|---|
| Journal | J Mol Biol |
|---|
| Year | 1988 |
|---|
| Volume | 199 |
|---|
| Pages | 637-48 |
|---|
| Authors | Schreuder HA, van der Laan JM, Hol WG, Drenth J |
|---|
| Title | Crystal structure of p-hydroxybenzoate hydroxylase complexed with its reaction product 3,4-dihydroxybenzoate. |
|---|
| Related PDB | 1phh |
|---|
| Related Swiss-prot | P00438 |
|---|
| [8] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 2819062 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1989 |
|---|
| Volume | 28 |
|---|
| Pages | 7199-205 |
|---|
| Authors | van der Laan JM, Schreuder HA, Swarte MB, Wierenga RK, Kalk KH, Hol WG, Drenth J |
|---|
| Title | The coenzyme analogue adenosine 5-diphosphoribose displaces FAD in the active site of p-hydroxybenzoate hydroxylase. An x-ray crystallographic investigation. |
|---|
| Related PDB | 2phh |
|---|
| [9] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 2553983 |
|---|
| Journal | J Mol Biol |
|---|
| Year | 1989 |
|---|
| Volume | 208 |
|---|
| Pages | 679-96 |
|---|
| Authors | Schreuder HA, Prick PA, Wierenga RK, Vriend G, Wilson KS, Hol WG, Drenth J |
|---|
| Title | Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 A resolution. Analysis of the enzyme-substrate and enzyme-product complexes. |
|---|
| Related PDB | 1pbe |
|---|
| [10] |
|---|
| PubMed ID | 2337581 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1990 |
|---|
| Volume | 29 |
|---|
| Pages | 3101-8 |
|---|
| Authors | Schreuder HA, Hol WG, Drenth J |
|---|
| Title | Analysis of the active site of the flavoprotein p-hydroxybenzoate hydroxylase and some ideas with respect to its reaction mechanism. |
|---|
| [11] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF REDUCED FORM |
|---|
| Medline ID | 93028353 |
|---|
| PubMed ID | 1409567 |
|---|
| Journal | Proteins |
|---|
| Year | 1992 |
|---|
| Volume | 14 |
|---|
| Pages | 178-90 |
|---|
| Authors | Schreuder HA, van der Laan JM, Swarte MB, Kalk KH, Hol WG, Drenth J |
|---|
| Title | Crystal structure of the reduced form of p-hydroxybenzoate hydroxylase refined at 2.3 A resolution. |
|---|
| Related Swiss-prot | P00438 |
|---|
| [12] |
|---|
| PubMed ID | 8365400 |
|---|
| Journal | Eur J Biochem |
|---|
| Year | 1993 |
|---|
| Volume | 216 |
|---|
| Pages | 137-46 |
|---|
| Authors | Eschrich K, van der Bolt FJ, de Kok A, van Berkel WJ |
|---|
| Title | Role of Tyr201 and Tyr385 in substrate activation by p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. |
|---|
| [14] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF MUTANTS |
|---|
| Medline ID | 94146010 |
|---|
| PubMed ID | 8312276 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1994 |
|---|
| Volume | 33 |
|---|
| Pages | 1555-64 |
|---|
| Authors | Lah MS, Palfey BA, Schreuder HA, Ludwig ML |
|---|
| Title | Crystal structures of mutant Pseudomonas aeruginosa p-hydroxybenzoate hydroxylases: the Tyr201Phe, Tyr385Phe, and Asn300Asp variants. |
|---|
| Related PDB | 1pxa,1pxb,1pxc |
|---|
| Related Swiss-prot | P20586 |
|---|
| [13] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 7520279 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1994 |
|---|
| Volume | 33 |
|---|
| Pages | 10161-70 |
|---|
| Authors | Schreuder HA, Mattevi A, Obmolova G, Kalk KH, Hol WG, van der Bolt FJ, van Berkel WJ |
|---|
| Title | Crystal structures of wild-type p-hydroxybenzoate hydroxylase complexed with 4-aminobenzoate,2,4-dihydroxybenzoate, and 2-hydroxy-4-aminobenzoate and of the Tyr222Ala mutant complexed with 2-hydroxy-4-aminobenzoate. Evidence for a proton channel and a new binding mode of the flavin ring. |
|---|
| Related PDB | 1pbb,1pbc,1pbd,1pbf |
|---|
| [15] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 7756982 |
|---|
| Journal | Protein Sci |
|---|
| Year | 1994 |
|---|
| Volume | 3 |
|---|
| Pages | 2245-53 |
|---|
| Authors | van Berkel WJ, Eppink MH, Schreuder HA |
|---|
| Title | Crystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified FAD present in alcohol oxidase from methylotrophic yeasts: evidence for an arabinoflavin. |
|---|
| Related PDB | 1pdh |
|---|
| [16] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) |
|---|
| Medline ID | 95025875 |
|---|
| PubMed ID | 7939628 |
|---|
| Journal | Science |
|---|
| Year | 1994 |
|---|
| Volume | 266 |
|---|
| Pages | 110-4 |
|---|
| Authors | Gatti DL, Palfey BA, Lah MS, Entsch B, Massey V, Ballou DP, Ludwig ML |
|---|
| Title | The mobile flavin of 4-OH benzoate hydroxylase. |
|---|
| Related PDB | 1dob,1doc,1dod,1doe |
|---|
| Related Swiss-prot | P20586 |
|---|
| [17] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF MUTANT LYS-44 |
|---|
| Medline ID | 95354684 |
|---|
| PubMed ID | 7628466 |
|---|
| Journal | Eur J Biochem |
|---|
| Year | 1995 |
|---|
| Volume | 231 |
|---|
| Pages | 157-65 |
|---|
| Authors | Eppink MH, Schreuder HA, Van Berkel WJ |
|---|
| Title | Structure and function of mutant Arg44Lys of 4-hydroxybenzoate hydroxylase implications for NADPH binding. |
|---|
| Related PDB | 1bkw |
|---|
| Related Swiss-prot | P00438 |
|---|
| [18] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) |
|---|
| Medline ID | 96140232 |
|---|
| PubMed ID | 8555229 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1996 |
|---|
| Volume | 35 |
|---|
| Pages | 567-78 |
|---|
| Authors | Gatti DL, Entsch B, Ballou DP, Ludwig ML |
|---|
| Title | pH-dependent structural changes in the active site of p-hydroxybenzoate hydroxylase point to the importance of proton and water movements during catalysis. |
|---|
| Related PDB | 1ius,1iut,1iuu,1iuv,1iuw,1iux |
|---|
| Related Swiss-prot | P20586 |
|---|
| [19] |
|---|
| PubMed ID | 9369493 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1997 |
|---|
| Volume | 36 |
|---|
| Pages | 14192-201 |
|---|
| Authors | van der Bolt FJ, van den Heuvel RH, Vervoort J, van Berkel WJ |
|---|
| Title | 19F NMR study on the regiospecificity of hydroxylation of tetrafluoro-4-hydroxybenzoate by wild-type and Y385F p-hydroxybenzoate hydroxylase: evidence for a consecutive oxygenolytic dehalogenation mechanism. |
|---|
| [20] |
|---|
| PubMed ID | 9385648 |
|---|
| Journal | Protein Sci |
|---|
| Year | 1997 |
|---|
| Volume | 6 |
|---|
| Pages | 2454-8 |
|---|
| Authors | Eppink MH, Schreuder HA, Van Berkel WJ |
|---|
| Title | Identification of a novel conserved sequence motif in flavoprotein hydroxylases with a putative dual function in FAD/NAD(P)H binding. |
|---|
| [21] |
|---|
| PubMed ID | 9546198 |
|---|
| Journal | Biophys Chem |
|---|
| Year | 1998 |
|---|
| Volume | 70 |
|---|
| Pages | 217-22 |
|---|
| Authors | Mattevi A |
|---|
| Title | The PHBH fold: not only flavoenzymes. |
|---|
| [22] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF MUTANT LYS-42 AND SER-42 |
|---|
| Medline ID | 98237589 |
|---|
| PubMed ID | 9578477 |
|---|
| Journal | Eur J Biochem |
|---|
| Year | 1998 |
|---|
| Volume | 253 |
|---|
| Pages | 194-201 |
|---|
| Authors | Eppink MH, Schreuder HA, van Berkel WJ |
|---|
| Title | Lys42 and Ser42 variants of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens reveal that Arg42 is essential for NADPH binding. |
|---|
| Related PDB | 1bf3 |
|---|
| Related Swiss-prot | P00438 |
|---|
| [23] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 9694855 |
|---|
| Journal | J Biol Chem |
|---|
| Year | 1998 |
|---|
| Volume | 273 |
|---|
| Pages | 21031-9 |
|---|
| Authors | Eppink MH, Schreuder HA, van Berkel WJ |
|---|
| Title | Interdomain binding of NADPH in p-hydroxybenzoate hydroxylase as suggested by kinetic, crystallographic and modeling studies of histidine 162 and arginine 269 variants. |
|---|
| Related PDB | 1bgj,1bgn |
|---|
| [24] |
|---|
| PubMed ID | 10320359 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1999 |
|---|
| Volume | 38 |
|---|
| Pages | 6292-9 |
|---|
| Authors | Moran GR, Entsch B, Palfey BA, Ballou DP |
|---|
| Title | Mechanistic insights into p-hydroxybenzoate hydroxylase from studies of the mutant Ser212Ala. |
|---|
| [25] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 10600126 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1999 |
|---|
| Volume | 38 |
|---|
| Pages | 16636-47 |
|---|
| Authors | Ortiz-Maldonado M, Gatti D, Ballou DP, Massey V |
|---|
| Title | Structure-function correlations of the reaction of reduced nicotinamide analogues with p-hydroxybenzoate hydroxylase substituted with a series of 8-substituted flavins. |
|---|
| Related PDB | 1d7l |
|---|
| [26] |
|---|
| PubMed ID | 9930974 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1999 |
|---|
| Volume | 38 |
|---|
| Pages | 1153-8 |
|---|
| Authors | Palfey BA, Moran GR, Entsch B, Ballou DP, Massey V |
|---|
| Title | Substrate recognition by "password" in p-hydroxybenzoate hydroxylase. |
|---|
| [27] |
|---|
| PubMed ID | 10606503 |
|---|
| Journal | Biochemistry |
|---|
| Year | 1999 |
|---|
| Volume | 38 |
|---|
| Pages | 16727-32 |
|---|
| Authors | Zheng Y, Dong J, Palfey BA, Carey PR |
|---|
| Title | Using Raman spectroscopy to monitor the solvent-exposed and "buried" forms of flavin in p-hydroxybenzoate hydroxylase. |
|---|
| [28] |
|---|
| Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) OF VARIANTS |
|---|
| Medline ID | 99148809 |
|---|
| PubMed ID | 10025942 |
|---|
| Journal | FEBS Lett |
|---|
| Year | 1999 |
|---|
| Volume | 443 |
|---|
| Pages | 251-5 |
|---|
| Authors | Eppink MH, Bunthol C, Schreuder HA, van Berkel WJ |
|---|
| Title | Phe161 and Arg166 variants of p-hydroxybenzoate hydroxylase. Implications for NADPH recognition and structural stability. |
|---|
| Related PDB | 1cc4,1cc6 |
|---|
| Related Swiss-prot | P00438 |
|---|
| [29] |
|---|
| Comments | X-ray crystallography |
|---|
| PubMed ID | 10493859 |
|---|
| Journal | J Mol Biol |
|---|
| Year | 1999 |
|---|
| Volume | 292 |
|---|
| Pages | 87-96 |
|---|
| Authors | Eppink MH, Overkamp KM, Schreuder HA, Van Berkel WJ |
|---|
| Title | Switch of coenzyme specificity of p-hydroxybenzoate hydroxylase. |
|---|
| Related PDB | 1cj2,1cj3,1cj4 |
|---|
| [30] |
|---|
| PubMed ID | 10736773 |
|---|
| Journal | J Mol Graph Model |
|---|
| Year | 1999 |
|---|
| Volume | 17 |
|---|
| Pages | 163-75, 214 |
|---|
| Authors | Ridder L, Mulholland AJ, Rietjens IM, Vervoort J |
|---|
| Title | Combined quantum mechanical and molecular mechanical reaction pathway calculation for aromatic hydroxylation by p-hydroxybenzoate-3-hydroxylase. |
|---|
| [31] |
|---|
| PubMed ID | 10922496 |
|---|
| Journal | FEBS Lett |
|---|
| Year | 2000 |
|---|
| Volume | 478 |
|---|
| Pages | 197-201 |
|---|
| Authors | Ridder L, Palfey BA, Vervoort J, Rietjens IM |
|---|
| Title | Modelling flavin and substrate substituent effects on the activation barrier and rate of oxygen transfer by p-hydroxybenzoate hydroxylase. |
|---|
| [32] |
|---|
| PubMed ID | 11300768 |
|---|
| Journal | Biochemistry |
|---|
| Year | 2001 |
|---|
| Volume | 40 |
|---|
| Pages | 3891-9 |
|---|
| Authors | Frederick KK, Ballou DP, Palfey BA |
|---|
| Title | Protein dynamics control proton transfers to the substrate on the His72Asn mutant of p-hydroxybenzoate hydroxylase. |
|---|
| [33] |
|---|
| PubMed ID | 11170433 |
|---|
| Journal | Biochemistry |
|---|
| Year | 2001 |
|---|
| Volume | 40 |
|---|
| Pages | 1091-101 |
|---|
| Authors | Ortiz-Maldonado M, Ballou DP, Massey V |
|---|
| Title | A rate-limiting conformational change of the flavin in p-hydroxybenzoate hydroxylase is necessary for ligand exchange and catalysis: studies with 8-mercapto- and 8-hydroxy-flavins. |
|---|
| [34] |
|---|
| PubMed ID | 11248022 |
|---|
| Journal | Proc Natl Acad Sci U S A |
|---|
| Year | 2001 |
|---|
| Volume | 98 |
|---|
| Pages | 3006-11 |
|---|
| Authors | Altose MD, Zheng Y, Dong J, Palfey BA, Carey PR |
|---|
| Title | Comparing protein-ligand interactions in solution and single crystals by Raman spectroscopy. |
|---|
| [35] |
|---|
| PubMed ID | 11805318 |
|---|
| Journal | Proc Natl Acad Sci U S A |
|---|
| Year | 2002 |
|---|
| Volume | 99 |
|---|
| Pages | 608-13 |
|---|
| Authors | Wang J, Ortiz-Maldonado M, Entsch B, Massey V, Ballou D, Gatti DL |
|---|
| Title | Protein and ligand dynamics in 4-hydroxybenzoate hydroxylase. |
|---|
| [36] |
|---|
| PubMed ID | 14503873 |
|---|
| Journal | Biochemistry |
|---|
| Year | 2003 |
|---|
| Volume | 42 |
|---|
| Pages | 11234-42 |
|---|
| Authors | Ortiz-Maldonado M, Entsch B, Ballou DP |
|---|
| Title | Conformational changes combined with charge-transfer interactions are essential for reduction in catalysis by p-hydroxybenzoate hydroxylase. |
|---|
| [37] |
|---|
| PubMed ID | 12684497 |
|---|
| Journal | J Biol Chem |
|---|
| Year | 2003 |
|---|
| Volume | 278 |
|---|
| Pages | 22210-6 |
|---|
| Authors | Palfey BA, Murthy YV, Massey V |
|---|
| Title | Altered balance of half-reactions in p-hydroxybenzoate hydroxylase caused by substituting the 2'-carbon of FAD with fluorine. |
|---|
| [38] |
|---|
| PubMed ID | 14769033 |
|---|
| Journal | Biochemistry |
|---|
| Year | 2004 |
|---|
| Volume | 43 |
|---|
| Pages | 1569-79 |
|---|
| Authors | Ortiz-Maldonado M, Cole LJ, Dumas SM, Entsch B, Ballou DP |
|---|
| Title | Increased positive electrostatic potential in p-hydroxybenzoate hydroxylase accelerates hydroxylation but slows turnover. |
|---|
| [39] |
|---|
| PubMed ID | 14709077 |
|---|
| Journal | J Am Chem Soc |
|---|
| Year | 2004 |
|---|
| Volume | 126 |
|---|
| Pages | 127-42 |
|---|
| Authors | Bach RD, Dmitrenko O |
|---|
| Title | Model studies on p-hydroxybenzoate hydroxylase. The catalytic role of Arg-214 and Tyr-201 in the hydroxylation step. |
|---|
| [40] |
|---|
| PubMed ID | 15581585 |
|---|
| Journal | Arch Biochem Biophys |
|---|
| Year | 2005 |
|---|
| Volume | 433 |
|---|
| Pages | 297-311 |
|---|
| Authors | Entsch B, Cole LJ, Ballou DP |
|---|
| Title | Protein dynamics and electrostatics in the function of p-hydroxybenzoate hydroxylase. |
|---|
| comments | According to the literature [10], [13], [14] & [40], this enzyme catalyzes the following reactions: (A) Hydride transfer from NADPH to FAD, forming FADH2 (Reduction of FAD by NADPH) (Reductive half-reaction): (B) Oxygenation of hydroxybenzoate by O2 at FADH2 (Oxidative half-reaction): (B1) Oxygenation to form a flavin 4a-hydroperoxide intermediate. (B2) Additive double-bond deformation; Addition of hydroxyl group to substrate, 4-hydroxybenzoate, by flavin 4a-hydroperoxide intermediate (Hydroxylation of substrate), forming 3,4-dihydroxybenzoate and a flavin 4a-hydroxide intermediate. (B3) Eliminative double-bond formation; Elimination of H2O from flavin 4a-hydroxide intermediate, giving FAD.
|
| created | updated |
|---|
| 2004-03-24 | 2009-02-26 |
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