PDB-REPRDB
( based on PDB Rel.#2010_05_14 , 145181 chains )
(Nov. 06, 2010 updated.)

Eliminate and Sort Chains

Since 30/Mar/99

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PDB-REPRDB is a reorganized database of protein chains from PDB. Each group consists of chains similar to each other in terms of either sequence or structure. Each representative chain has the best quality in each chain group.

Here is a sample, example1.

factors apply constraints threshold priority

Resolution No Yes X > will be eliminated.

R-factor No Yes X > will be eliminated.

number of chain break No Yes X > will be eliminated.

ratio of non-standard residues No Yes X > %will be eliminated.

ratio of residues with only CA coordinates No Yes X > %will be eliminated.

ratio of residues with only backbone coordinates No Yes X > %will be eliminated.

number of residues No Yes X < will be eliminated.

include MUTANT No Yes

COMPLEX only COMPLEX
exclude COMPLEX
All

FRAGMENT only FRAGMENT
exclude FRAGMENT
All

include NMR No Yes

include membrane proteins No Yes

Representative protein chains from PDB

factors	apply constraints	threshold	priority
Resolution	No Yes	X > will be eliminated.
R-factor	No Yes	X > will be eliminated.
number of chain break	No Yes	X > will be eliminated.
ratio of non-standard residues	No Yes	X > %will be eliminated.
ratio of residues with only CA coordinates	No Yes	X > %will be eliminated.
ratio of residues with only backbone coordinates	No Yes	X > %will be eliminated.
number of residues	No Yes	X < will be eliminated.
include MUTANT	No Yes
COMPLEX	only COMPLEX exclude COMPLEX All
FRAGMENT	only FRAGMENT exclude FRAGMENT All
include NMR	No Yes
include membrane proteins	No Yes

PDB-REPRDB ( based on PDB Rel.#2010_05_14 , 145181 chains )(Nov. 06, 2010 updated.)

Eliminate and Sort Chains

Please confirm 'Service status' before submitting your job.

PDB-REPRDB
( based on PDB Rel.#2010_05_14 , 145181 chains )
(Nov. 06, 2010 updated.)